Nextflow workflow report

[fabulous_blackwell]

Workflow execution completed successfully!
Run times
05-Oct-2024 16:02:40 - 06-Oct-2024 05:08:34 (duration: 12h 5m 54s)
  511 succeeded  
  0 cached  
  0 ignored  
  6 failed  
Nextflow command
nextflow run nf-core/rnaseq -profile sahmri -c /cancer/storage/SAGC/workshop/Workshop_data/nfRNAseq/nextflow.config -r 3.14.0 --input /cancer/storage/SAGC/workshop/Workshop_data/nfRNAseq/nfSampleSheet.csv --outdir /cancer/storage/SAGC/workshop/Workshop_data/nfRNAseq/outs --fasta /homes/daniel.thomson/References/GRCh38/Ensembl_download/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa --gtf /homes/daniel.thomson/References/GRCh38/Ensembl_download/Homo_sapiens.GRCh38.111.gtf --skip_dupradar --skip_qualimap -resume
CPU-Hours
730.1 (33.9% failed)
Launch directory
/hpc/capacity/SAGC/workshop/Workshop_data/nfRNAseq
Work directory
/hpc/capacity/SAGC/workshop/Workshop_data/nfRNAseq/work
Project directory
/homes/daniel.thomson/.nextflow/assets/nf-core/rnaseq
Script name
main.nf
Script ID
746820de9bf04c0ec23e1e0295aaf91b
Workflow session
b8dc6ea0-b938-4179-ba77-9e115af63492
Workflow repository
https://github.com/nf-core/rnaseq, revision 3.14.0 (commit hash b89fac32650aacc86fcda9ee77e00612a1d77066)
Workflow profile
sahmri
Nextflow version
version 23.10.0, build 5889 (15-10-2023 15:07 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)